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New phosphorylating reagents for deoxyribonucleosides and oligonucleotides
Authors:Valeria Romanucci  Armando Zarrelli  Annalisa Guaragna  Cinzia Di Marino  Giovanni Di Fabio
Affiliation:1. Department of Chemical Sciences, University of Napoli ''Federico II'', Via Cintia 4, 80126 Napoli, Italy;2. Inter-University Consortium “SannioTech”, 82030 Apollosa, Benevento, Italy
Abstract:New phosphorylating reagents 1 and 2 were prepared in three steps from 4-hydroxybenzaldehyde. They showed good efficiency in the solid phase synthesis of 5′-phosphate monoester nucleosides. End-phosphate DNA sequence synthesis demonstrated the efficiency of the new reagents (1 and 2) according to the general procedure of automated DNA synthesis. The oxidation of P(III) to P(V) and the removal of benzyl protecting groups were achieved in a single step by treatment with a 0.02 M I2/pyridine/H2O solution. Due to this one-pot treatment, it is possible to use the phosphorylating reagents (1 and 2) for the synthesis of base-sensitive ODNs. The reagents 1 and 2 are unique among phosphorylating reagents.
Keywords:Phosphorylation  Phosphate protecting group  Nucleotides  Oligonucleotides  Solid phase synthesis
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