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NanoFAST: structure-based design of a small fluorogen-activating protein with only 98 amino acids
Authors:Konstantin S Mineev  Sergey A Goncharuk  Marina V Goncharuk  Natalia V Povarova  Anatolii I Sokolov  Nadezhda S Baleeva  Alexander Yu Smirnov  Ivan N Myasnyanko  Dmitry A Ruchkin  Sergey Bukhdruker  Alina Remeeva  Alexey Mishin  Valentin Borshchevskiy  Valentin Gordeliy  Alexander S Arseniev  Dmitriy A Gorbachev  Alexey S Gavrikov  Alexander S Mishin  Mikhail S Baranov
Abstract:One of the essential characteristics of any tag used in bioscience and medical applications is its size. The larger the label, the more it may affect the studied object, and the more it may distort its behavior. In this paper, using NMR spectroscopy and X-ray crystallography, we have studied the structure of fluorogen-activating protein FAST both in the apo form and in complex with the fluorogen. We showed that significant change in the protein occurs upon interaction with the ligand. While the protein is completely ordered in the complex, its apo form is characterized by higher mobility and disordering of its N-terminus. We used structural information to design the shortened FAST (which we named nanoFAST) by truncating 26 N-terminal residues. Thus, we created the shortest genetically encoded tag among all known fluorescent and fluorogen-activating proteins, which is composed of only 98 amino acids.

We solved the structure of a fluorogen-activating protein FAST and synthesized the library of potential fluorogens. Using these data, we designed the shortest genetically encoded fluorescent tag among all known.
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