An efficient fixed-parameter algorithm for 3-Hitting Set

Given a collection C of subsets of size three of a finite set S and a positive integer k, the 3-Hitting Set problem is to determine a subset S′S with |S′|k, so that S′ contains at least one element from each subset in C. The problem is NP-complete, and is motivated, for example, by applications in computational biology. Improving previous work, we give an O(2.270^k+n) time algorithm for 3-Hitting Set, which is efficient for small values of k, a typical occurrence in some applications. For d-Hitting Set we present an O(c^k+n) time algorithm with c=d−1+O(d⁻¹).