A multiscale molecular switch model |
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Authors: | A M Popov G N Shumkin |
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Institution: | 1.Faculty of Computational Mathematics and Cybernetics,Moscow State University,Moscow,Russia |
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Abstract: | A first-principles mathematical simulation of molecular switching of the isomerization reaction in a naphthalocyanine molecule
on the basis of a current-induced tunnel microscope is presented. The Gibbs free energy surface and the reaction pathway are
analyzed in terms of metadynamics using the numerical quantum mechanical Car-Parrinello molecular dynamics (CPMD) code. The
calculations were performed on an IBM Blue Gene/P supercomputer at Moscow State University’s Faculty of Computational Mathematics
and Cybernetics. The height of the energy barrier that must be overcome to achieve the isomerization reaction is found along
an introduced coordination variable. A multiscale model of Ehrenfest molecular dynamics states is proposed on the basis of
an excited electron. The model uses the coordination direction of the reaction on the free energy surface obtained in calculations
for a complete molecule. |
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Keywords: | |
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