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Electronic,intermolecular, quantum computational investigations,molecular docking and simulation studies of the potent antiviral drug EIDD-2801
Affiliation:1. Department of Physics, Fatima College, Madurai, 625018, Tamilnadu, India;2. Department of Chemistry, The American College, Madurai, 625002, Tamilnadu, India;3. Department of Biotechnology, M S Ramaiah Institute of Technology, Bengaluru, 560054, Karnataka, India;4. Department of Chemistry, Panimalar Engineering College, Chennai, 600123, Tamil Nadu, India;5. Department of Chemistry, Thiagarajar College, Madurai, 625009, Tamilnadu, India;6. Department of Biotechnology, Siddaganga Institute of Technology, Tumakuru, 572103, Karnataka, India;7. Department of Pharmaceutical Chemistry, M S Ramaiah University of Applied Sciences, Bengaluru, 560054, Karnataka, India;8. Research Center for Advanced Materials Science (RCAMS), King Khalid University, P.O. Box 9004, Abha, 61413, Saudi Arabia;9. Department of Chemistry, College of Science, King Khalid University, P.O. Box 9004, Abha, 61413, Saudi Arabia;10. Department of Physics, Arignar Anna Govt. Arts College, Cheyyar, 604 407, Tamilnadu, India
Abstract:In this work, an analysis has been done to describe the molecular structure, spectroscopic, reduced density gradient, topological properties, atomic charges, Lipinski rule, Natural bond orbital analysis, docking and molecular dynamics simulation of the potent antiviral drug EIDD-2801 in the effective treatment against COVID-19. Intramolecular charge distribution is well understood by three schemes such as AIM, Mulliken and NBO analysis and non-covalent interactions have been understood through reduced density gradient. Topological properties, such as charge density and Laplacian of charge density along with the electron localization function, make it easy to obtain comprehensive information about bond strengths and critical points. The details obtained from the calculation of global reactivity descriptors and Lipinski rule are useful for understanding the nature of molecular reactivity and site selectivity. Electrostatic potentials help to identify potential electrophilic and nucleophilic sites for interaction between EIDD-2801 and target proteins. The molecular docking combined with molecular dynamic simulation studies enables us to get better picture about the ligand-protein interaction.
Keywords:DFT  Topological properties  Electrostatic potential  Docking analysis  Dynamic simulation
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