Characterizing Active Site Conformational Heterogeneity along the Trajectory of an Enzymatic Phosphoryl Transfer Reaction |
| |
Authors: | Dr Cathleen Zeymer Dr Nicolas D Werbeck Sabine Zimmermann Dr Jochen Reinstein Dr D Flemming Hansen |
| |
Institution: | 1. Department of Biomolecular Mechanisms, Max Planck Institute for Medical Research, Heidelberg, Germany;2. Division of Biosciences, Institute of Structural and Molecular Biology, University College London, London, UK |
| |
Abstract: | States along the phosphoryl transfer reaction catalyzed by the nucleoside monophosphate kinase UmpK were captured and changes in the conformational heterogeneity of conserved active site arginine side‐chains were quantified by NMR spin‐relaxation methods. In addition to apo and ligand‐bound UmpK, a transition state analog (TSA) complex was utilized to evaluate the extent to which active site conformational entropy contributes to the transition state free energy. The catalytically essential arginine side‐chain guanidino groups were found to be remarkably rigid in the TSA complex, indicating that the enzyme has evolved to restrict the conformational freedom along its reaction path over the energy landscape, which in turn allows the phosphoryl transfer to occur selectively by avoiding side reactions. |
| |
Keywords: | active-site dynamics arginine conformational entropy NMR spectroscopy nucleoside monophosphate kinase |
|
|