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Satellite Hole Investigation of the Vibrational Modes of 9-Aminoacridine upon Binding to DNA
Authors:Ji-Yen Cheng  Chien-Chih Chiang  Yah-Ru Cheng  Hsuan-Shen Chen  Leh-Jame Lin  Ta-Chau Chang
Abstract:The spectral features of satellite holes are used to investigate 9-aminoacridine-DNA interactions. The hole depths of the outer ring vibronic modes are reduced more than that of the inner ring vibronic modes, implying that inner ring motion is less perturbed than outer ring motion. As a result, the mode coupling between the inner ring and outer ring is reduced upon binding to DNA. However, similar hole frequency and width of the satellite hole corresponding to the NH2 mode upon binding to DNA imply that the amino group of 9-aminoacridine sits outside the DNA.
Keywords:Hole burning  Satellite holes  9AA-DNA interactions  Mode coupling  Conformational structure
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