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NMR‐Solution Structures of Fluoro‐Substituted β‐Peptides: A 314‐Helix and a Hairpin Turn. The First Case of a 90° OC?C?F Dihedral Angle in an α‐Fluoro‐Amide Group
Authors:Raveendra I. Mathad  Bernhard Jaun  Oliver Flögel  James Gardiner  Markus Löweneck  Jeroen D. C. Codée  Peter H. Seeberger  Dieter Seebach  Michael K. Edmonds  Florian H. M. Graichen  Andrew D. Abell
Affiliation:1. Laboratorium für Organische Chemie, Departement Chemie und Angewandte Biowissenschaften, ETH‐Zürich, HCI H?nggerberg, Wolfgang‐Pauli‐Strasse 10, CH‐8093 Zürich;2. Part of the Ph.D. Thesis of R.?I.?M., ETH Dissertation No. 17209.;3. Postdoctoral Research Fellow at ETH‐Zürich, 2004–2006, financed by the Deutsche Forschungsgemeinschaft, by the Swiss National Science Foundation, Project No. 200020‐100182, and by Novartis Pharma AG, Basel.;4. Postdoctoral Research Fellow at ETH‐Zürich, 2004–2007, financed by the New Zealand Foundation for Research Science and Technology, Project No. SWSS0401.;5. Postdoctoral Research Fellow at ETH‐Zürich, financed by the Swiss National Science Foundation, Project No. 200020‐109065/1.;6. Postdoctoral Fellow in the group of Prof. P.?H. Seeberger, ETH‐Zürich 2005–2006.;7. Department of Chemistry, University of Canterbury, Private Bag 4800, Christchurch, New Zealand;8. Current address, School of Chemistry & Physics, University of Adelaide, SA 5005, Australia.
Abstract:To further study the preference of the antiperiplanar (ap) conformation in α‐fluoro‐amide groups, two β‐peptides, 1 and 2 , containing a (2‐F)‐β3hAla and a (2‐F)‐β2hPhe residue, have been synthesized. Their NMR‐solution structures in CD3OH were determined and compared with those of non‐F‐substituted analogs, 3 and 4a . While we have found in a previous investigation (Helv. Chim. Acta 2005 , 88, 266) that a stereospecifically introduced F‐substituent in the central position of a βheptapeptide is capable of ‘breaking’ the 314‐helical structure by enforcing the F? C? C?O ap‐conformation, we could now demonstrate that the same procedure leads to a structure with the unfavorable ca. 90° F? C? C?O dihedral angle, enforced by the 314‐helical folding in a βtridecapeptide (cf. 1 ; Fig. 4). This is interpreted as a consequence of cooperative folding in the longer β‐peptide. A F‐substituent placed in the turn section of a β‐peptidic hairpin turn was shown to be in an ap‐arrangement with respect to the neighboring C?O bond (cf. 2 ; Fig. 7). Analysis of the non‐F‐substituted β‐tetrapeptides (with helix‐preventing configurations of the two central β2/β3‐amino acid residues) provides unusually tight hairpin structural clusters (cf. 3 and 4a ; Figs. 8 and 9). The skeleton of the β‐tetrapeptide H‐(R)β3hVal‐(R)β2hVal‐(R)β3hAla‐(S)β3hPhe‐OH ( 4a ) is proposed as a novel, very simple backbone structure for mimicking α‐peptidic hairpin turns.
Keywords:Peptides  Amides, α  ‐fluoro‐  314‐Helices  Hairpin turn  Stereoelectronic effect
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