Structural determination of nerve agent markers using gas chromatography mass spectrometry after derivatization with 3‐pyridyldiazomethane

Nerve agents are a class of organophosphorous chemicals that are prohibited under the Chemical Weapons Convention. Their degradation products, phosphonic acids, are analyzed as markers of nerve agent contamination and use. Because the phosphonic acids are non‐volatile and very polar, their identification by GC‐MS requires a derivatization step prior to analysis. Standard derivatization methods for gas‐chromatography electron‐impact mass‐spectrometry analysis give very similar spectra for many alkyl phosphonic acid isomers, which complicates the identification process. We present a new reagent, 3‐pyridyldiazomethane, for preparing picolinyl ester derivatives of alkyl methylphosphonic acids facilitating the determination of their structure by enhancing predictable fragmentation of the O‐alkyl chain. This fragmentation is directed by the nitrogen nucleus of the pyridyl moiety that abstracts hydrogen from the O‐alkyl chain, inducing radical cleavage of the carbon–carbon bonds and thereby causing extensive fragmentation that can be used for detailed structure elucidation of the O‐alkyl moiety. The separability of related isomers was tested by comparing the spectra of the picolinyl esters formed from twelve hexyl methylphosphonic acid isomers. Spectral library matches and principal component analysis showed that the picolinyl esters were more effectively separated than the corresponding trimethylsilyl derivatives used in the standard operating procedures. The suggested method will improve the unambiguous structural determination process for phosphonic acids. Copyright © 2013 John Wiley & Sons, Ltd.