Negative ion fragmentations of deprotonated peptides containing post‐translational modifications. An unusual cyclisation/rearrangement involving phosphotyrosine; a joint experimental and theoretical study

The characteristic fragmentations of a pTyr group in the negative ion electrospray mass spectrum of the M–H]^? anion of a peptide or protein involve the formation of PO (m/z 79) and the corresponding (M‐H)^?–HPO₃]^? species. In some tetrapeptides where pTyr is the third residue, these characteristic anion fragmentations are accompanied by ions corresponding to H₂PO and (M‐H)^?–H₃PO₄]^? (these are fragmentations normally indicating the presence of pSer or pThr). These product ions are formed by rearrangement processes which involve initial nucleophilic attack of a C‐terminal ‐CO or ‐C(?NH)O^?] group at the phosphorus of the Tyr side chain an S_N2(P) reaction]. The rearrangement reactions have been studied by ab initio calculations at the HF/6‐31+G(d)//AM1 level of theory. The study suggests the possibility of two processes following the initial S_N2(P) reaction. In the rearrangement (involving a C‐terminal carboxylate anion) with the lower energy reaction profile, the formation of the H₂PO and (M‐H)^?–H₃PO₄]^? anions is endothermic by 180 and 318 kJ mol^?1, respectively, with a maximum barrier (to a transition state) of 229 kJ mol^?1. The energy required to form H₂PO by this rearrangement process is (i) more than that necessary to effect the characteristic formation of PO from pTyr, but (ii) comparable with that required to effect the characteristic α, β and γ backbone cleavages of peptide negative ions. Copyright © 2009 John Wiley & Sons, Ltd.