Statistical Mechanics Analysis of ATP Binding to a Multisubunit Enzyme |
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Authors: | ZHANG Yun-Xin |
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Affiliation: | Shanghai Key Laboratory for Contemporary Applied Mathematics, Centre for Computational System Biology, School of Mathematical Sciences, Fudan University, Shanghai 200433, China;Shanghai Center for Mathematical Sciences, Shanghai 200433, China |
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Abstract: | Due to inter-subunit communication, multisubunit enzymes usually hydrolyze ATP in a concerted fashion. However, so far the principle of this process remains poorly understood. In this study, from the viewpoint of statistical mechanics, a simple model is presented. In this model, we assume that the binding of ATP will change the potential of the corresponding enzyme subunit, and the degree of this change depends on the state of its adjacent subunits. The probability of enzyme in a given state satisfies the Boltzmann's distribution. Although it looks much simple, this model can fit the recent experimental data of chaperonin TRiC/CCT well. From this model, the dominant state of TRiC/CCT can be obtained. This study provide a new way to understand biophysical processe by statistical mechanics analysis. |
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Keywords: | multisubunit enzyme KNF MWC TRiC |
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