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Markov Bases of Binary Graph Models
Authors:Mike?Develin  author-information"  >  author-information__contact u-icon-before"  >  mailto:develin@post.harvard.edu"   title="  develin@post.harvard.edu"   itemprop="  email"   data-track="  click"   data-track-action="  Email author"   data-track-label="  "  >Email author,Seth?Sullivant
Affiliation:(1) American Institute of Mathematics, 360 Portage Ave., 94306-2244 Palo Alto, CA, USA;(2) Department of Mathematics, University of California-Berkeley, 94720-3840 Berkeley, CA, USA
Abstract:This paper is concerned with the topological invariant of a graph given by the maximumdegree of a Markov basis element for the corresponding graph model for binary contingencytables. We describe a degree four Markov basis for the model when the underlying graph is a cycleand generalize this result to the complete bipartite graph K2,n. We also give a combinatorialclassification of degree two and three Markov basis moves as well as a Buchberger-free algorithmto compute moves of arbitrary given degree. Finally, we compute the algebraic degree ofthe model when the underlying graph is a forest.AMS Subject Classification: 05C99, 13P10, 62Q05.
Keywords:Markov bases  contingency tables  graphical models  hierarchical models  toric ideals
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