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Markov Bases of Binary Graph Models
Authors:Email author" target="_blank">Mike?DevelinEmail author  Seth?Sullivant
Institution:(1) American Institute of Mathematics, 360 Portage Ave., 94306-2244 Palo Alto, CA, USA;(2) Department of Mathematics, University of California-Berkeley, 94720-3840 Berkeley, CA, USA
Abstract:This paper is concerned with the topological invariant of a graph given by the maximum degree of a Markov basis element for the corresponding graph model for binary contingency tables. We describe a degree four Markov basis for the model when the underlying graph is a cycle and generalize this result to the complete bipartite graph K2,n. We also give a combinatorial classification of degree two and three Markov basis moves as well as a Buchberger-free algorithm to compute moves of arbitrary given degree. Finally, we compute the algebraic degree of the model when the underlying graph is a forest.AMS Subject Classification: 05C99, 13P10, 62Q05.
Keywords:Markov bases  contingency tables  graphical models  hierarchical models  toric ideals
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