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AM1-SM2 and PM3-SM3 parameterized SCF solvation models for free energies in aqueous solution
Authors:Christopher J. Cramer  Donald G. Truhlar
Affiliation:(1) Research Directorate, Physics Division, Chemometric and Biometric Modeling Branch, U.S. Army Chemical Research Development and Engineering Center, 21010-5423 Aberdeen Proving Ground, MD, U.S.A.;(2) Department of Chemistry and Supercomputer Institute, University of Minnesota, 55455-0431 Minneapolis, MN, U.S.A.;(3) Present address: Department of Chemistry, University of Minnesota, 55455-0431 Minneapolis, MN, U.S.A.
Abstract:Summary Two new continuum solvation models have been presented recently, and in this paper they are explained and reviewed in detail with further examples. Solvation Model 2 (AM1-SM2) is based on the Austin Model 1 and Solvation Model 3 (PM3-SM3) on the Parameterized Model 3 semiempirical Hamiltonian. In addition to the incorporation of phosphorus parameters, both of these new models address specific deficiencies in the original Solvation Model 1 (AM1-SM1), viz., (1) more accurate account is taken of the hydrophobic effect of hydrocarbons, (2) assignment of heavy-atom surface tensions is based on the presence or absence of bonded hydrogen atoms, and (3) the treatment of specific hydration-shell water molecules is more consistent. The new models offer considerably improved performance compared to AM1-SM1 for neutral molecules and essentially equivalent performance for ions. The solute charges within the Parameterized Model 3 Hamiltonian limit the utility of PM3-SM3 for compounds containing nitrogen and possibly phosphorus. For other systems both AM1-SM2 and PM3-SM3 give realistic results, but AM1-SM2 in general outperforms PM3-SM3. Key features of the models are discussed with respect to alternative approaches.
Keywords:Free energy  Hydration  Molecular modeling  Solubility  Solvent-accessible surface area
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