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Mechanism of dioxygen activation in 2-oxoglutarate-dependent enzymes: a hybrid DFT study
Authors:Borowski Tomasz  Bassan Arianna  Siegbahn Per E M
Institution:Department of Physics, Stockholm Center for Physics, Astronomy and Biotechnology, Stockholm University, 106 91 Stockholm, Sweden. borowski@physto.se
Abstract:The reaction mechanism for dioxygen activation in 2-oxoglutarate-dependent enzymes has been studied by means of hybrid density functional theory. The results reported here support a mechanism in which all chemical transformations take place on a quintet potential-energy surface. More specifically, the activated dioxygen species attacks the carbonyl group of the co-substrate producing the Fe(II)-persuccinate-CO(2) complex, which readily releases the carbon dioxide molecule. The step in which the Fe(II)-peracid-CO(2) complex is formed is found to be rate-limiting and irreversible. Subsequent heterolysis of the Obond;O bond in the Fe(II)-persuccinate complex proceeds in two one-electron steps and produces the high-valent iron-oxo species Fe(IV)dbond;O, which is most likely to be responsible for oxidative reactions catalyzed by 2-oxoglutarate-dependent enzymes. The concerted pathway for simultaneous Obond;O and Cbond;C bond cleavage on the septet potential-energy surface is found to be less favorable. The relative stability of different forms of the active iron-oxo species is assessed, and the quintet five-coordinate complex is found to be most stable.
Keywords:density functional calculations  enzyme catalysis  non‐heme iron enzymes  O?O activation  oxoglutarate
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