金属核酸酶及寡聚酰胺与双链DNA分子对接模式的理论研究

采用分子对接软件AutoDock分别研究了金属核酸酶、寡聚酰胺与DNA对接模式. 研究结果表明, 金属核酸酶、寡聚酰胺与DNA对接结果与实验数据吻合得较好. 在金属核酸酶与DNA的对接中, 最优构型都是金属核酸酶对接在DNA的小沟内. 随着中心金属上电荷的增加, 最大对接能呈现上升趋势. 尤其是配体体积较小的金属核酸酶, 最佳对接位点受中心金属上电荷影响较大, 即随着中心金属上电荷的从少到多, 最佳对接位点呈现多样化的趋势. 在柔性分子寡聚酰胺与双链DNA分子的对接中, 分子随DNA小沟的柔性变形是对接结合的关键. 其最佳的结合物位点也都是在DNA的小沟内, 其对接结果与晶体结构一致.

Molecular Docking Studies on the Metallonucleases and Polyamides with Double-strand DNA Molecules

The studies on molecular docking of metallonucleases and polyamides with DNA were investigated via AutoDock program.Our studies demonstrate that the results of docking metal nucleases and poly-amides with double-strand DNA are consistent with those of the experiments.The characteristics of the optimal conformations for the two copper nucleases with DNA are that the two copper nucleases are docked into the minor groove of DNA.With the increase of the charges at copper center,the biggest docked energies for t...