Accessing DNA by low voltage alternating current Joule effect heating |
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Authors: | Jonathan West Eileen Hurley John K. Collins Helen Berney |
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Affiliation: | a National Microelectronics Research Centre (NMRC), Prospect Row, Cork, Ireland b Department of Microbiology, University College Cork, Cork, Ireland |
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Abstract: | A DNA release sample preparation method based on the use of low voltage alternating currents (LVACs) to generate Joule effect heating (JEH) is reported. This is a simple cell disruption strategy that offers internal, homogenous, rapid and low power consumption heating for the access of analytical grade DNA in seconds.A 100 μL JEH microreactor with a parallel and symmetric two electrode arrangement for uniform field generation was fabricated by machining and used to characterise JEH and DNA release from human epithelia, yeast (Saccharomyces cerevisiae) and Gram-positive bacteria (Enterococcus faecium) cell types. A 1 kHz sinusoidal low voltage (e.g. 10 Vrms) alternating current was used to reduce electrode:sample interactions. Following 96 °C JEH treatment, effective DNA release was identified by PicoGreen® quantification for all three cell types. The JEH treated sample material was further successfully used, without purification, as a PCR template. Exposure to JEH-mediated 96 °C temperatures for a 1 s duration was used to provide PCR-grade DNA template material from S. cerevisiae and E. faecium cells, and a 10 s duration was used for human epithelia cells. However, prolonged (>1 min) exposure to 96 °C JEH-mediated temperatures resulted in diminished DNA returns and the production of components that interfered with the PCR reaction.Further miniaturisation of the LVAC JEH cell by microfabrication was considered, and a JEH microreactor designs were evaluated by FLOTHERM v3.2 thermal modelling. Thermal isolation, using a free-standing cavity structure was identified as an excellent means to enable rapid heating (220 °C s−1) with low power consumption (0.2 W). |
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Keywords: | Genetic analysis Sample preparation DNA extraction Joule effect heating Microreactor |
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