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Second‐Generation Fluorescent Quadracyclic Adenine Analogues: Environment‐Responsive Probes with Enhanced Brightness
Authors:Dr. Blaise Dumat  Mattias Bood  Moa S. Wranne  Dr. Christopher P. Lawson  Dr. Anders Foller Larsen  Dr. Søren Preus  Jens Streling  Dr. Henrik Gradén  Dr. Eric Wellner  Prof. Morten Grøtli  Prof. L. Marcus Wilhelmsson
Affiliation:1. Department of Chemical and Chemical Engineering/, Chemistry and Biochemistry, Chalmers University of Technology, 41296 Gothenburg (Sweden);2. Department of Chemistry, Medicinal Chemistry, University of Gothenburg, 41296 Gothenburg (Sweden);3. Interdisciplinary Nanoscience Center (iNANO), Aarhus University, Aarhus?C, 8000 (Denmark);4. AstraZeneca R&D M?lndal, 431 83 M?lndal (Sweden)
Abstract:Fluorescent base analogues comprise a group of increasingly important molecules for the investigation of nucleic acid structure, dynamics, and interactions with other molecules. Herein, we report on the quantum chemical calculation aided design, synthesis, and characterization of four new putative quadracyclic adenine analogues. The compounds were efficiently synthesized from a common intermediate through a two‐step pathway with the Suzuki–Miyaura coupling as the key step. Two of the compounds, qAN1 and qAN4, display brightnesses (εΦF) of 1700 and 2300, respectively, in water and behave as wavelength‐ratiometric pH probes under acidic conditions. The other two, qAN2 and qAN3, display lower brightnesses but exhibit polarity‐sensitive dual‐band emissions that could prove useful to investigate DNA structural changes induced by DNA–protein or –drug interactions. The four qANs are very promising microenvironment‐sensitive fluorescent adenine analogues that display considerable brightness for such compounds.
Keywords:aromatic substitution  C  C coupling  fluorescent probes  nucleic acids  nucleobases
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