Quantitation of isomeric ion mixtures using collisional activation mass spectra

Recently Bass and Bowers have criticized methods for calculation of isomeric composition of gaseous ions based on mass spectra from collisionally activated dissociations (CAD). They fault values from this laboratory on the proportion of benzyl and tropylium ions calculated by two methods from product ion abundances. However, a careful remeasurement of the relevant yields of CAD product ions shows that neither calculation method affected the result outside experimental error, as the ion yields for at least 14 higher energy dissociations are insensitive to both isomeric identity and internal energy. Reducing the [C₇H₇]⁺ internal energy by 1.5 eV does give a 25% reduction in the ion yield for the lowest energy process, supporting the accepted recommendation that these be omitted for quantitative spectral comparisons. A calculation error was made in one of our previous reports on [C₇H₇]⁺, and corrected isomeric composition values are presented. The disparate values from recalculation by Bass and Bowers of other data from this laboratory on [C₂H₄O]^+˙ ions are shown here to be consistent with the large experimental error of those measurements; the medians of their values are actually near the values originally reported. In direct contrast to their assertions, we find no evidence that previous calculation methods have produced misleading conclusions, or that the assumption of linear superposition of CAD spectra in ion mixtures has yielded unreliable results.