Influence of Solution Acidity on Structure of Actinocin Derivatives and Their Affinity to DNA Studied as a Function of pH by Raman Spectroscopy

An important problem of molecular biophysics is the influence of pH and ionic strength of a solution on chemical structures and charge of biologically active substances. By means of pH titration and Raman spectroscopy methods, the influence of solution acidity on structural changes of actinocin derivatives was investigated, analogues to antitumor antibiotic actinomycin D. It has been shown that these ligands have different values of cation charges in neutral solutions. From analysis of Raman spectra, it was concluded that protonation of nitrogen atom and amino group of the phenoxazone ring starts only at pH < 3.5. It was shown that protonation of actinocin derivative with two amide groups (diaminoactinocin) occurred in two steps. Corresponding protonation constants for diaminoactinocin (log k ₁ = 6.9 ± 0.5 and log k ₂ = 5.3 ± 0.1) and for partially protonated actinocin derivative with three methylene groups in the side chains (log k = 5.3 ± 0.1) were obtained. Characteristic frequencies of Raman spectra for the basic functional C=O, C2–NH₂, C–C=C, and –N=C groups of phenoxazone chromophore of actinocin derivatives in protonated and nonprotonated states were determined. The different affinities of binding of variously charged ligands to DNA have also been demonstrated.