Hexachloroiridate(IV) as a redox probe for the electrochemical discrimination of B-DNA and M-DNA monolayers on gold

This paper demonstrates the effectiveness of using the redox couple to investigate DNA monolayers, and compares the potential advantages of this system to the standard redox couple. B-DNA monolayers were converted to M-DNA by incubation in buffer containing 0.4 mM Zn²⁺ at pH 8.6 and studied by cyclic voltammetry (CV), impedance spectroscopy (IS) and chronoamperometry (CA) with . Compared to B-DNA, M-DNA showed significant changes in CV, IS and CA spectra. However, only small changes were observed when the monolayers were incubated in Mg²⁺ at pH 8.6 or in Zn²⁺ at pH 6.0. The heterorgeneous electron-transfer rate (k_ET) between the redox probe and the surface of a bare gold electrode was determined to be 5.7 × 10⁻³ cm/s. For a B-DNA modified electrode, the k_ET through the monolayer was too slow to be measured. However, under M-DNA conditions, a k_ET of 1.5 × 10⁻³ cm/s was reached. As well, the percent change in resistance to charge transfer, measured by IS, was used to illustrate the dependence of M-DNA formation on pH. This result is consistent with Zn²⁺ ions replacing the imino protons on thymine and guanine residues. The redox couple was also effective in differentiating between single-stranded and double-stranded DNA during de-hybridization and rehybridization experiments.