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The Amber biomolecular simulation programs
Authors:Case David A  Cheatham Thomas E  Darden Tom  Gohlke Holger  Luo Ray  Merz Kenneth M  Onufriev Alexey  Simmerling Carlos  Wang Bing  Woods Robert J
Institution:Department of Molecular Biology, The Scripps Research Institute, 10550 North Torrey Pines Raod, TPC15, La Jolla, CA 92037, USA. case@scripps.edu
Abstract:We describe the development, current features, and some directions for future development of the Amber package of computer programs. This package evolved from a program that was constructed in the late 1970s to do Assisted Model Building with Energy Refinement, and now contains a group of programs embodying a number of powerful tools of modern computational chemistry, focused on molecular dynamics and free energy calculations of proteins, nucleic acids, and carbohydrates.
Keywords:Amber  biomolecular simulation programs
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