Modeling the structure,absorption spectra,and cis-trans isomerization of thiacarbocyanine dyes

The relative stability of the trans-and cis-isomers of 3,3′-diethylthiacarbocyanine (Dye1) and 3,3′-diethyl-9-methylthiacarbocyanine (Dye2)¹, as well as sections of the potential energy surfaces along the internal coordinate of the isomerization reaction, were studied using the density functional theory. Calculation of the minimum energy pathway for the isomerization reaction showed that the barrier for rotation about the C₈–C₉ bond is higher for Dye1 than for Dye2. Local minimums were found for the singlet excited state of the 8,9-cis-and trans-isomers of the dyes. In the case of the trans-isomers, substantial changes in the dye structure do not occur and the local minimum of the excited state corresponds to the geometry of the starting trans-isomers, which favors efficient fluorescence. A search for the nearest local minimum of the singlet excited state of the 8,9-cis-isomers leads to structures, which differ significantly from the starting structures, and the intensity of the S₁ → S₀ transition in those structures appears to be practically zero. The results are in agreement with experimental data on the absorption, fluorescence, and fluorescence excitation spectra of the dyes.