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Dynein-Inspired Multilane Exclusion Process with Open Boundary Conditions
Authors:Riya Nandi  Uwe C Tuber  Priyanka
Institution:1.Department of Genetics and Evolution, University of Geneva, 1205 Geneva, Switzerland;2.Department of Physics (MC 0435) & Center for Soft Matter and Biological Physics, Faculty of Health Sciences, Virginia Tech, Blacksburg, VA 24061, USA;3.Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
Abstract:Motivated by the sidewise motions of dynein motors shown in experiments, we use a variant of the exclusion process to model the multistep dynamics of dyneins on a cylinder with open ends. Due to the varied step sizes of the particles in a quasi-two-dimensional topology, we observe the emergence of a novel phase diagram depending on the various load conditions. Under high-load conditions, our numerical findings yield results similar to the TASEP model with the presence of all three standard TASEP phases, namely the low-density (LD), high-density (HD), and maximal-current (MC) phases. However, for medium- to low-load conditions, for all chosen influx and outflux rates, we only observe the LD and HD phases, and the maximal-current phase disappears. Further, we also measure the dynamics for a single dynein particle which is logarithmically slower than a TASEP particle with a shorter waiting time. Our results also confirm experimental observations of the dwell time distribution: The dwell time distribution for dyneins is exponential in less crowded conditions, whereas a double exponential emerges under overcrowded conditions.
Keywords:dynein motors  exclusion process  phase diagram  dwell time distribution
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