烷基修饰寡聚脱氧核苷酸磷酸残基的化学合成及稳定性研究

分别采用格氏试剂和三氯化磷三步取代法合成了4个新的烷基修饰磷酸残基的亚磷酸酰胺单体, 其结构经1H NMR和31P NMR表征. 利用这些单体合成模型序列5'-dTTTx TT-3', 考察了单体及寡聚核苷酸序列在DNA/RNA合成条件下的稳定性, 提出了固相合成含有烷基修饰磷酸残基的寡聚核苷酸序列裂解及脱保护条件.

Chemical Synthesis and Stability of Oligonucleotides Modified by Alkyl- or Alkoxy- on the Phosphonates

Four novel phosphoramidites with isopentyl, phenethyl, isopentoxy, phenethoxy attached to the phosphorus residue were synthesized through Grignard reaction or a sequential three-step substitution on PCl3 respectively. Four model oligonucleotides(5'-dTTTx TT-3', where Tx was formed by introducing each of the novel phosphoramidites above-mentioned) were prepared with high coupling yields to study the compatibility of the new building blocks to the customized DNA/RNA synthesis, and the stability of the oligonucleotides were tested under four kinds of deprotection conditions. Based on HPLC analysis and MALDI-TOF-MS measurement, the fast-deprotection strategy(concentrated ammonia, room temperature, 4 h) was suitable for the solid-phase synthesis of oligonucleotides containing above new building blocks. Undoubtedly, these novel phosphoramidites could be used as the building blocks for nucleic acids research.