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一种用于核酸绝对定量检测的高鲁棒性液滴式数字PCR芯片
引用本文:彭伙,高则航,廖承悦,王晓冬,周洪波,赵建龙.一种用于核酸绝对定量检测的高鲁棒性液滴式数字PCR芯片[J].高等学校化学学报,2020,41(8):1760.
作者姓名:彭伙  高则航  廖承悦  王晓冬  周洪波  赵建龙
作者单位:1. 中国科学院上海微系统与信息技术研究所, 传感技术联合国家重点实验室, 上海 200050;2. 中国科学院大学, 北京 100049;3. 上海科技大学信息科学与技术学院, 上海 201210;4. 北京旌微医学工程研究院有限公司, 北京 100176
基金项目:国家重点研发计划项目(批准号:2017YFA0205303,2017ZX10302201005006)、中国科学院青年创新促进会(批准号:2018267)、中国科学院科研装备研究项目(批准号:YJKYYQ20170043)、上海市科学技术委员会科技支撑计划(批准号:17441904300)、国家自然科学基金(批准号:61804158)和上海市青年科技英才扬帆计划(批准号:18YF1428300)资助.
摘    要:为满足液滴式数字聚合酶链式反应(PCR)技术对扩增反应过程中稳定保存液滴以及反应后高效检测的核心需求,构建了一种具有过滤气泡和增强荧光信号功能的液滴式数字聚合酶链式反应芯片.该芯片可在10 min内产生20多万个半径约为21 μm的液滴.利用“玻璃天花板”的方式构建了独立于芯片主体材料的液滴收集腔,为液滴提供稳定的保存与反应环境;还构建了过滤结构,可有效过滤混入液相中的空气,提高芯片鲁棒性.同时,在液滴收集腔中引入反射层,增强荧光信号,使单个视野荧光成像时间缩短约40%,提高了检测效率.利用该芯片定量检测EGFR基因第21号外显子,检测信号与DNA浓度在101~105 copies/μL范围内呈现良好的线性关系(R2=0.998).该方案在载玻片大小的芯片上实现了液滴产生、PCR扩增和荧光信号读取,并具有较高的鲁棒性与检测效率,在核酸检测等方面具有应用潜力.

关 键 词:数字聚合酶链式反应  液滴微流控芯片  核酸定量检测  脱氧核糖核酸  
收稿时间:2020-05-29

Robust Droplet Digital PCR Chip for Absolute Quantitative Detection of Nucleic Acid
PENG Huo,GAO Zehang,LIAO Chengyue,WANG Xiaodong,ZHOU Hongbo,ZHAO Jianlong.Robust Droplet Digital PCR Chip for Absolute Quantitative Detection of Nucleic Acid[J].Chemical Research In Chinese Universities,2020,41(8):1760.
Authors:PENG Huo  GAO Zehang  LIAO Chengyue  WANG Xiaodong  ZHOU Hongbo  ZHAO Jianlong
Institution:1. State Key Laboratory of Transducer Technology, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences, Shanghai 200050, China;2. University of Chinese Academy of Sciences, Beijing 100049, China;3. School of Information Science and Technology, Shanghai Tech University, Shanghai 201210, China;4. Beijing Genome Way Medical Engineering Research Institute Co., Ltd., Beijing 100176, China
Abstract:A highly robust droplet digital polymerase chain reaction(ddPCR) chip with filtering bubbles and enhancing fluorescence is constructed to meet the core requirements of the stable preservation of droplets in the amplification process and the high-efficiency detection after the reaction. The chip could produce more than 2×105 droplets with a radius of ca. 21 μm in 10 min. The droplet collection chamberis built independent of the chip material via "glass ceiling" method, provided a stable environment for droplets. At the same time, the filter structure is constructed to effectively filter the air mixed into the liquid phase, improving the robustness of the chip. The reflector, introduced into the collecting chamber, enhances the fluorescence signal, reducing exposure time and improving the detection efficiency. Using this chip to detect EGFR exon 21, a good linear correlation with the DNA concentration from 101 to 105 copies/μL(R2=0.998) could be obtained. In general, the scheme, which achieved droplet generation, PCR amplification and fluorescence readout on the chip robustly and efficiently, has potential in nucleic acid detection and related applications.
Keywords:Digital polymerase chain reaction(PCR)  Droplet microfluidic chip  Nucleic acid detection  DNA  
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