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Theoretical modeling of the nonenzymatic solvolysis of CMP-NeuAc in an acidic environment
Authors:Bartosz Trzaskowski  Andrzej Le   Abraham F Jalbout  Ludwik Adamowicz  Per EM Siegbahn
Institution:

aFaculty of Chemistry, Warsaw University, Pasteura 1, 02-093 Warsaw, Poland

bDepartment of Chemistry, University of Arizona, Tucson, AZ 85721, USA

cInstitute of Chemistry, National Autonomous University of Mexico, Mexico City, Mexico

dDepartment of Physics, Stockholm Centre for Physics, Astronomy and Biotechnology (SCFAB), Stockholm University, S-106 91 Stockholm, Sweden

Abstract:A density-functional-theory investigation of the nonenzymatic solvolysis of the cytydine 5′-monophosphate N-acetylneuraminic acid and its derivatives in the acidic environment is presented. The theoretical calculations of the second stage of the reaction mechanism are in agreement with the hypothesis of a dissociative oxocarbenium-like transition state with proton transfer as a key part of the reaction. The geometries of the transition states of the reactions yielding greek small letter alpha-methyl and β-methyl glycosides are essentially different. This study provides new theoretical data that can be helpful in elucidating the mechanism of the carbohydrates hydrolysis as well as other reactions catalyzed by the glycosyltransferases.
Keywords:CMP-NeuAc  Solvolysis  Sialic acid  Sialyltransferase  DFT
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