Pathways for Water Loss from Doubly Protonated Peptides Containing Serine or Threonine

The doubly-protonated peptides Ala-Ala-Xaa-Ala-Ala-Ala-Arg show extensive loss of H₂O when Xaa = Ser or Thr. Using quasi-MS³ techniques the fragmentation reactions of the M + 2H – H₂O]⁺² ions have been studied in detail. For both Ser and Thr, the M + 2H – H₂O]⁺² ions show three primary fragmentation reactions, elimination of CH₃CH = NH, elimination of one Ala residue, and elimination of two Ala residues, in all cases forming doubly-charged products. From a study of the further fragmentation of these products, it is concluded that elimination of two Ala residues results in formation of a three-membered aziridine ring by interaction with the adjacent amide function as H₂O is lost. The elimination of one Ala residue results in formation of a five-membered oxazoline ring through interaction with the N-terminal adjacent carbonyl function as H₂O is lost. The elimination of CH₃CH = NH appears to involve formation of an eight-membered ring by interaction with the remote N-terminal carbonyl function as H₂O is lost. However, this initial structure undergoes rearrangement through interaction with the adjacent C-terminal carbonyl function prior to further fragmentation. The MH – H₂O]⁺ ion of Ala-Ala-Ser-Ala-Ala-Ala also shows elimination of CH₃CH = NH, one Ala residue and two Ala residues.