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On the kinematics of protein folding
Authors:Cahill Sean  Cahill Michael  Cahill Kevin
Institution:Department of Computer Science, University of New Mexico, Albuquerque, New Mexico 87131, USA.
Abstract:We offer simple solutions to three kinematic problems that occur in the folding of proteins. We show how to construct suitably local elementary Monte Carlo moves, how to close a loop, and how to fold a loop without breaking the bond that closes it.
Keywords:protein folding  homology modeling  loops  Monte Carlo  kinematics  wriggling
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