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Inheritance and correlation of nucleic acid pyrimidine bases
Authors:Zejin Yang  Patrick Duffy  Feng Wang
Institution:1. School of Science, Zhejiang University of Technology, , Hangzhou, 310023 China;2. eChemistry Laboratory, Faculty of Life and Social Sciences, Swinburne University of Technology, Hawthorn, , Melbourne, Victoria, 3122 Australia;3. Department of Chemistry, Kwantlen Polytechnic University, , British Columbia, V6X 3V8 Canada
Abstract:Valence electronic structures of pyrimidine (P, C4N2H4) and nucleic acid (NA) pyrimidine bases, including cytosine (C, C4N3OH5), thymine (T, C5N2O2H6), and uracil (U, C4N2O2H4), are studied using B3LYP/aug‐cc‐pVTZ, B3LYP/TZVP, SAOP/et‐pVQZ, and OVGF/TZVP. The highest occupied molecular orbital (HOMO) and the next HOMO (NHOMO) of pyrimidine are conclusively assigned as 7b2 and 2b1, respectively. The ionization energy spectra and valence orbital momentum distributions studies reveal that the NA bases, that is, cytosine, thymine, and uracil, exhibit a larger degree of similarity to each other than to pyrimidine, although they do inherit certain properties from pyrimidine. © 2013 Wiley Periodicals, Inc.
Keywords:molecular orbital  pyrimidine  ionization energy
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