首页 | 本学科首页   官方微博 | 高级检索  
     


Solutions to a reduced Poisson-Nernst-Planck system and determination of reaction rates
Authors:Bo Li  Benzhuo Lu  J. Andrew McCammon
Affiliation:a Department of Mathematics, University of California, San Diego, 9500 Gilman Drive, Mail code: 0112. La Jolla, CA 92093-0112, USA
b Center for Theoretical Biological Physics, University of California, San Diego, 9500 Gilman Drive, Mail code: 0374. La Jolla, CA 92093-0374, USA
c Institute of Computational Mathematics and Scientific/Engineering Computing, Chinese Academy of Sciences, Beijing, 100190, China
d Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, Mail code: 0365. La Jolla, CA 92093-0363, USA
e Department of Pharmacology, University of California, San Diego, La Jolla, CA 92093-0365, USA
f Howard Hughes Medical Institute, University of California, San Diego, La Jolla, CA 92093-0365, USA
Abstract:We study a reduced Poisson-Nernst-Planck (PNP) system for a charged spherical solute immersed in a solvent with multiple ionic or molecular species that are electrostatically neutralized in the far field. Some of these species are assumed to be in equilibrium. The concentrations of such species are described by the Boltzmann distributions that are further linearized. Others are assumed to be reactive, meaning that their concentrations vanish when in contact with the charged solute. We present both semi-analytical solutions and numerical iterative solutions to the underlying reduced PNP system, and calculate the reaction rate for the reactive species. We give a rigorous analysis on the convergence of our simple iteration algorithm. Our numerical results show the strong dependence of the reaction rates of the reactive species on the magnitude of its far field concentration as well as on the ionic strength of all the chemical species. We also find non-monotonicity of electrostatic potential in certain parameter regimes. The results for the reactive system and those for the non-reactive system are compared to show the significant differences between the two cases. Our approach provides a means of solving a PNP system which in general does not have a closed-form solution even with a special geometrical symmetry. Our findings can also be used to test other numerical methods in large-scale computational modeling of electro-diffusion in biological systems.
Keywords:Electro-diffusion   Reaction rates   Ionic concentrations   Boltzmann distributions   The Debye-Hü  ckel approximation   The Poisson-Nernst-Planck system   Semi-analytical solution   Iteration method
本文献已被 ScienceDirect 等数据库收录!
设为首页 | 免责声明 | 关于勤云 | 加入收藏

Copyright©北京勤云科技发展有限公司  京ICP备09084417号