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Crystal Structure of Metallo DNA Duplex Containing Consecutive Watson–Crick‐like T–HgII–T Base Pairs |
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| Authors: | Dr. Jiro Kondo Tom Yamada Chika Hirose Dr. Itaru Okamoto Dr. Yoshiyuki Tanaka Prof. Akira Ono |
| Affiliation: | 1. Department of Materials and Life Sciences, Faculty of Science and Technology, Sophia University, 7‐1 Kioi‐cho, Chiyoda‐ku, 102‐8554 Tokyo (Japan);2. Department of Material and Life Chemistry, Faculty of Engineering, Kanagawa University, Yokohama 221‐8686 (Japan);3. Laboratory of Molecular Transformation, Graduate School of Pharmaceutical Sciences, Tohoku University, Sendai 980‐8578 (Japan) |
| Abstract: | The metallo DNA duplex containing mercury‐mediated T–T base pairs is an attractive biomacromolecular nanomaterial which can be applied to nanodevices such as ion sensors. Reported herein is the first crystal structure of a B‐form DNA duplex containing two consecutive T–HgII–T base pairs. The HgII ion occupies the center between two T residues. The N3‐HgII bond distance is 2.0 Å. The relatively short HgII‐HgII distance (3.3 Å) observed in consecutive T–HgII–T base pairs suggests that the metallophilic attraction could exist between them and may stabilize the B‐form double helix. To support this, the DNA duplex is largely distorted and adopts an unusual nonhelical conformation in the absence of HgII. The structure of the metallo DNA duplex itself and the HgII‐induced structural switching from the nonhelical form to the B‐form provide the basis for structure‐based design of metal‐conjugated nucleic acid nanomaterials. |
| Keywords: | DNA helical structures mercury metalation structure elucidation |