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Single‐Molecule Sensing of Environmental pH—an STM Break Junction and NEGF‐DFT Approach
Authors:Dr. Zhihai Li  Dr. Manuel Smeu  Sepideh Afsari  Dr. Yangjun Xing  Prof. Mark A. Ratner  Prof. Eric Borguet
Affiliation:1. Department of Chemistry, Temple University, 1901 North 13th Street, Philadelphia, PA 19122 (USA);2. Department of Chemistry, Northwestern University, Evanston, IL 60208 (USA)
Abstract:Sensors play a significant role in the detection of toxic species and explosives, and in the remote control of chemical processes. In this work, we report a single‐molecule‐based pH switch/sensor that exploits the sensitivity of dye molecules to environmental pH to build metal–molecule–metal (m‐M‐m) devices using the scanning tunneling microscopy (STM) break junction technique. Dyes undergo pH‐induced electronic modulation due to reversible structural transformation between a conjugated and a nonconjugated form, resulting in a change in the HOMO–LUMO gap. The dye‐mediated m‐M‐m devices react to environmental pH with a high on/off ratio (≈100:1) of device conductivity. Density functional theory (DFT) calculations, carried out under the non‐equilibrium Green’s function (NEGF) framework, model charge transport through these molecules in the two possible forms and confirm that the HOMO–LUMO gap of dyes is nearly twice as large in the nonconjugated form as in the conjugated form.
Keywords:density functional calculations  dyes/pigments  molecular electronics  pH sensors  sensing  single‐molecule devices
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