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A note on fundamental,non-fundamental,and robust cycle bases
Authors:Konstantin Klemm  Peter F Stadler
Institution:1. Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, Härtelstraße 16-18, D-04107 Leipzig, Germany;2. Fraunhofer Institut für Zelltherapie und Immunologie, Perlickstraße 1, D-04103 Leipzig, Germany;3. Department of Theoretical Chemistry, University of Vienna, Währingerstraße 17, A-1090 Wien, Austria;4. Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM 87501, USA
Abstract:In many biological systems, robustness is achieved by redundant wiring, and reflected by the presence of cycles in the graphs connecting the systems’ components. When analyzing such graphs, cyclically robust cycle bases of are of interest since they can be used to generate all cycles of a given 2-connected graph by iteratively adding basis cycles. It is known that strictly fundamental (or Kirchhoff) bases, i.e., those that can be derived from a spanning tree, are not necessarily cyclically robust. Here we note that, conversely, cyclically robust bases (even of planar graphs) are not necessarily fundamental. Furthermore, we present a class of cubic graphs for which cyclically robust bases can be explicitly constructed.
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