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Protein Backbone N Relaxation Rates as a Tool for the Diagnosis of Structure Quality
Authors:Eva de Alba  Nico Tjandra
Affiliation:Laboratory of Biophysical Chemistry, Building 3, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, Maryland, 20892-0380
Abstract:In the work reported herein we define a structure validation factor that depends on protein backbone 15N relaxation rates. This is an alternative method to the previously defined quality factors derived from anisotropic chemical shifts or residual dipolar couplings. We have used the structure dependence of 15N relaxation rates of anisotropically tumbling proteins to calculate this structure diagnosis factor and have used it to demonstrate the improvement of protein structures refined with residual dipolar couplings.
Keywords:NMR   15N relaxation   protein structure   dipolar couplings   liquid crystal
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