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Cofilin-Membrane Interactions: Electrostatic Effects in Phosphoinositide Lipid Binding
Authors:Dr Shikha Prakash  Anjali Krishna  Dr Durba Sengupta
Institution:1. CSIR – National Chemical Laboratory, Dr. Homi Bhabha Road, Pune, 411008 India;2. CSIR – National Chemical Laboratory, Dr. Homi Bhabha Road, Pune, 411008 India

Current Address: School of Biological Sciences, University of Auckland, Auckland, 1010 New Zealand

Abstract:The actin cytoskeleton interacts with the cell membrane primarily through the indirect interactions of actin-binding proteins such as cofilin-1. The molecular mechanisms underlying the specific interactions of cofilin-1 with membrane lipids are still unclear. Here, we performed coarse-grain molecular dynamics simulations of cofilin-1 with complex lipid bilayers to analyze the specificity of protein-lipid interactions. We observed the maximal interactions with phosphoinositide (PIP) lipids, especially PIP2 and PIP3 lipids. A good match was observed between the residues predicted to interact and previous experimental studies. The clustering of PIP lipids around the membrane bound protein leads to an overall lipid demixing and gives rise to persistent membrane curvature. Further, through a series of control simulations, we observe that both electrostatics and geometry are critical for specificity of lipid binding. Our current study is a step towards understanding the physico-chemical basis of cofilin-PIP lipid interactions.
Keywords:complex membrane  lipid clustering  martini coarse-grain simulations  molecular dynamics simulations  protein-lipid interactions
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