Machine Learning Informs RNA-Binding Chemical Space** |
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Authors: | Kamyar Yazdani Deondre Jordan Mo Yang Christopher R Fullenkamp David R Calabrese Robert Boer Thomas Hilimire Timothy E H Allen Rabia T Khan John S Schneekloth Jr |
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Institution: | 1. Chemical Biology Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, MD 21702-1201 USA;2. Ladder Therapeutics, USA |
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Abstract: | Small molecule targeting of RNA has emerged as a new frontier in medicinal chemistry, but compared to the protein targeting literature our understanding of chemical matter that binds to RNA is limited. In this study, we reported R epository O f BI nders to N ucleic acids (ROBIN), a new library of nucleic acid binders identified by small molecule microarray (SMM) screening. The complete results of 36 individual nucleic acid SMM screens against a library of 24 572 small molecules were reported (including a total of 1 627 072 interactions assayed). A set of 2 003 RNA-binding small molecules was identified, representing the largest fully public, experimentally derived library of its kind to date. Machine learning was used to develop highly predictive and interpretable models to characterize RNA-binding molecules. This work demonstrates that machine learning algorithms applied to experimentally derived sets of RNA binders are a powerful method to inform RNA-targeted chemical space. |
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Keywords: | Machine Learning Medicinal Chemistry Nucleic Acids RNA Small Molecule Microarrays |
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