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Radial Basis Function Networks Applied in Bacterial Classification Based on MALDI-TOF-MS
Authors:ZHANG Zhuo-Yong  WANG Dan  LIU Si-dong  HARRINGTON Peter de B  VOORHEES Kent J  REES Jon
Affiliation:1. Department of Chemistry, Capital Normal University, Beijing 100037, China;
2. Faculty of Chemistry, Northeast Normal University, Changchun 130024, China;
3. Ohio University Center for Intelligent Chemical Instrumentation, Department of Chemistry and Biochemistry, Ohio University, Athens, Ohio 45701-2979, USA;
4. Department of Chemistry and Geochemistry, Colorado School of Mines, Golden, CO 80401, USA
Abstract:The radial basis function networks were applied to bacterial classification based on the matrix-assisted laser desorption/ionization time-of-flight mass spectrometric (MALDI-TOF-MS) data. The classification of bacteria cultured at different time was discussed and the effect of the network parameters on the classification was investigated. The cross-validation method was used to test the trained networks. The correctness of the classification of different bacteria investigated changes in a wide range from 61.5% to 92.8%. Owing to the complexity of biological effects in bacterial growth, the more rigid control of bacterial culture conditions seems to be a critical factor for improving the rate of correctness for bacterial classification.
Keywords:Radial basis function network   Matrix-assisted laser desorption/ionization   Time-of-flight mass spectrometry   Bacterium   Classification
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