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Protein side-chain dynamics observed by solution- and solid-state NMR: comparative analysis of methyl 2H relaxation data
Authors:Reif Bernd  Xue Yi  Agarwal Vipin  Pavlova Maria S  Hologne Maggy  Diehl Anne  Ryabov Yaroslav E  Skrynnikov Nikolai R
Affiliation:Forschunginstitut für Molekulare Pharmakologie, Robert-R?ssle-Str. 10, 13125 Berlin, Germany.
Abstract:Rapid advances in solid-state MAS NMR made it possible to probe protein dynamics on a per-residue basis, similar to solution experiments. In this work we compare methyl 2H relaxation rates measured in the solid and liquid samples of alpha-spectrin SH3 domain. The solution data are treated using a model-free approach to separate the contributions from the overall molecular tumbling and fast internal motion. The latter part forms the basis for comparison with the solid-state data. Although the accuracy of solid-state measurements is limited by deuterium spin diffusion, the results suggest a significant similarity between methyl dynamics in the two samples. This is a potentially important observation, preparing the ground for combined analysis of the dynamics data by solid- and solution-state NMR.
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