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三种金属硫蛋白动力学稳定性的理论研究
引用本文:侯廷军,安钰,茹炳根,徐筱杰.三种金属硫蛋白动力学稳定性的理论研究[J].物理化学学报,2000,16(3):221-225.
作者姓名:侯廷军  安钰  茹炳根  徐筱杰
作者单位:College of Chemistry and Molecular Engineering,Peking University,Beijing 100871,College of Life Sciences,Peking University,Beijing 100871
基金项目:国家自然科学基金重大项目资助(29992590-2) The Project Supported by NSFC(29992590-2)
摘    要:对三类金属硫蛋白(大鼠金属硫蛋白亚型Ⅱ,兔肝金属硫蛋白亚型Ⅰ和兔肝金属硫蛋白亚型Ⅱ)的单体和二聚体进行了水溶液条件下的分子动力学模拟。其中大鼠金属硫蛋白亚型Ⅱ的结构直接来自于晶体数据,兔肝金属硫蛋白亚型Ⅰ和Ⅱ的结构则通过同源蛋白模型搭建。动力学模拟的结果显示,这三种单体在水溶液中都具有相当大的柔性,柔性主要来源于柔性区的氨基酸残基。三类金属硫蛋白单体的动力学模拟均表明α结构域的动力学稳定性都要优于

关 键 词:分子动力学  金属硫蛋白  动力学稳定性  同源蛋白模型搭建  
收稿时间:1999-06-25
修稿时间:1999-09-06

Theoretic Studies of Dynamics Stability to Three Kinds of Metallothioneins
Hou Tingjun,An Yu,Ru Binggen,Xu Xiaojie.Theoretic Studies of Dynamics Stability to Three Kinds of Metallothioneins[J].Acta Physico-Chimica Sinica,2000,16(3):221-225.
Authors:Hou Tingjun  An Yu  Ru Binggen  Xu Xiaojie
Institution:College of Chemistry and Molecular Engineering,Peking University,Beijing 100871|College of Life Sciences,Peking University,Beijing 100871
Abstract:Molecular dynamics calculations were performed to monomers and dimers of three kinds of metallothioneins in water solution.For these kinds of metallothioneins,the structure of MT-II in rat liver obtained directly from Protein Data Bank,while other two structures of MT-I and MT-II in rabbit liver were constructed by homology modeling.The results of molecular dynamics showed that these three kinds of MTs possessed relatively high flexibility,which mainly derived from two residues in flexible region.To three kinds of monomer,the calculations results confirmed the view that the dynamics stability ofα domain was better than that of β domain.Comparing the coordinates r.m.s,it could be found that the dimers are more stable than the monomers.The main reason is that the conformational space of these residues in the flexible region would be restricted to some extent when the dimers formed.
Keywords:Molecular dynamics    Metallothionein    Dynamics stability    Homology modeling  
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