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Synthesis of new fluorogenic cyanine dyes and incorporation into RNA fluoromodules
Authors:Constantin Tudor P  Silva Gloria L  Robertson Kelly L  Hamilton Tamara P  Fague Kaitlin  Waggoner Alan S  Armitage Bruce A
Affiliation:Department of Chemistry and Molecular Biosensor and Imaging Center, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213-3890, USA.
Abstract:A new fluorogenic cyanine dye was synthesized and found to have low fluorescence quantum yield in fluid solution and in the presence of double-stranded DNA but 80-fold enhanced fluorescence in viscous glycerol solution. An RNA aptamer selected for binding to the new dye exhibits K(d) = 87 nM and 60-fold fluorescence enhancement. The dye-aptamer pair is a fluoromodule that can be incorporated into fluorescent sensors and labels.
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