THEORY OF THE OPTICAL ABSORPTION OF LIGHT-ADAPTED BACTERIORHODOPSIN AND ITS ACIDIFIED FORMS

Abstract— We assume a model for bacteriorhodopsin chromophore such that the protonated retinal Schiff-base (PRSB) interacts with two anions in the case of light-adapted bacteriorhodopsin (bR^L), while it does with one anion in the case of the acidified form of bacteriorhodopsin (bR^acid₆₀₀). On the basis of this model, the π-electronic states of all- trans -PRSB are calculated according to our LCAO-ASMO-SCF-CI method, the anions being approximated by negative point-charges in the plane of PRSB π-system. A possible distribution of the negative point-charges around PRSB is proposed for the chromophores of bR^L, bR^acid₆₀₀, and the two irradiated forms of bR^acid₆₀₀ (the one at 3°C containing 9- cis -PRSB, and the other at — 72°C all- trans -PRSB). It is shown that the wavelength λ_max of absorption maximum observed for each form of bacteriorhodopsin can be explained reasonably well by the suggested charge distribution. Furthermore, a model for the structure of the active site of bR^L is proposed, considering that two COO⁻ groups form the anions that interact with PRSB. The calculated optical absorption of all- trans -PRSB at such a site is shown to be consistent with the observed absorption spectrum of bR^L.