UV-Induced Nucleic Acid–Protein Cross-Linking: Manual on Planning of Irradiation Experiments and Calculation of Absorbed Dose and Quantum Yield

We have developed methods of photochemical quantitation of photobiological studies on UV-induced nucleic acid–protein cross-linking. Cases relating to incoherent low-intensity UV sources, laser UV sources and high-intensity laser UV sources are considered. In the case of low-intensity UV radiation the most important point is the correct determination of absorbed dose. The laser UV pulse energy is easily measured and the short-pulse irradiation also has the advantage of "freezing" the conformation of complexes under study. However, the use of high-intensity laser UV irradiation leads to realizations of two-quantum processes both in nucleic acid chromophores–bases and in solvent–water, which complicates singificantly the processing of results. In this paper methods for calculating the absorbed dose and the quantum yield of cross-linking for all above-mentioned cases are given as well as practical advice.