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High-resolution protein hydration NMR experiments: probing how protein surfaces interact with water and other non-covalent ligands
Authors:Huang Hao  Melacini Giuseppe
Affiliation:Departments of Chemistry, Biochemistry and Biomedical Sciences, McMaster University, 1280 Main Street, W. Hamilton, Ont., Canada L8S 4M1
Abstract:High-resolution solution NMR experiments are extremely useful to characterize the location and the dynamics of hydrating water molecules at atomic resolution. However, these methods are severely limited by undesired incoherent transfer pathways such as those arising from exchange-relayed intra-molecular cross-relaxation. Here, we review several complementary exchange network editing methods that can be used in conjunction with other types of NMR hydration experiments such as magnetic relaxation dispersion and 1JNC′ measurements to circumvent these limitations. We also review several recent contributions illustrating how the original solution hydration NMR pulse sequence architecture has inspired new approaches to map other types of non-covalent interactions going well beyond the initial scope of hydration. Specifically, we will show how hydration NMR methods have evolved and have been adapted to binding site mapping, ligand screening, protein-peptide and peptide-lipid interaction profiling.
Keywords:CT, constant time   CTJ, CT quadrature-free J-resolved dimension   DHPC, dihexanoyl phosphatylcholine   DMF, N,N-dimethylformamide   DMPC, dimyristoil phosphatylcholine   DMSO, dymethyl-sulfoxide   HIV, human immunodeficiency virus   IR, infra red   MD, molecular dynamics   HMQC, hetero-nuclear multiple quantum coherence spectrum   HSQC, hetero-nuclear single quantum coherence spectrum   MRD, magnetic relaxation dispersion   MS, mass spectrometry   NMR, nuclear magnetic resonance   NOE, nuclear overhauser effect   NOESY, 2D-NOE spectroscopy   PDB, protein data bank   PFG, pulsed field gradient   QF, quadrature-free   ROE, rotating frame overhauser effect   ROESY, 2D-ROE spectroscopy   TROSY, transverse relaxation optimized spectroscopy   XH, proton exchangeable with water
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