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Entropic compression of interacting DNA loops
Authors:Sankararaman Sumithra  Marko John F
Institution:Department of Physics, University of Illinois at Chicago, 60607, USA. sumithra@uic.edu
Abstract:We solve a model for the equilibrium folding of DNA via the formation of randomly placed (nonspecific) loops. We find that the loop rearrangement entropy drives a significant reduction in loop size as more loops form. The reduction of the most probable loop size occurs over a wide range of forces and is enhanced by interloop cooperativity, indicating that it should be observable in single DNA experiments.
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