Photochemistry of Thymine in Protic Polar Nanomeric Droplets Using Electrostatic Embeding TD-DFT/MM |
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Authors: | Miquel Huix-Rotllant |
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Institution: | Aix-Marseille University, CNRS, ICR, 13397 Marseille, France; |
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Abstract: | Thymine photochemistry is important for understanding DNA photodamage. In the gas phase, thymine undergoes a fast non-radiative decay from S to S . In the S state, it gets trapped for several picoseconds until returning to the ground-state S . Here, we explore the electrostatic effects of nanomeric droplets of methanol and water on the excited states of thymine. For this purpose, we develop and implement an electrostatic embedding TD-DFT/MM method based on a QM/MM coupling defined through electrostatic potential fitting charges. We show that both in methanol and water, the mechanism is similar to the gas phase. The solvent molecules participate in defining the branching plane of S /S intersection and have a negligible effect on the S /S intersection. Despite the wrong topology of the ground/excited state intersections, electrostatic embedding TD-DFT/MM allows for a fast exploration of the potential energy surfaces and a qualitative picture of the photophysics of thymine in solvent droplets. |
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Keywords: | electrostatic embedding QM/MM conical intersections nucleobases thymine |
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