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From Complex Natural Products to Simple Synthetic Mimetics by Computational De Novo Design
Authors:Lukas Friedrich  Dr Tiago Rodrigues  Claudia S Neuhaus  Dr Petra Schneider  Prof?Dr Gisbert Schneider
Institution:1. Department of Chemistry and Applied Biosciences, Swiss Federal Institute of Technology (ETH), Zurich, Switzerland;2. inSili.com GmbH, Zurich, Switzerland
Abstract:We present the computational de novo design of synthetically accessible chemical entities that mimic the complex sesquiterpene natural product (?)‐Englerin A. We synthesized lead‐like probes from commercially available building blocks and profiled them for activity against a computationally predicted panel of macromolecular targets. Both the design template (?)‐Englerin A and its low‐molecular weight mimetics presented nanomolar binding affinities and antagonized the transient receptor potential calcium channel TRPM8 in a cell‐based assay, without showing target promiscuity or frequent‐hitter properties. This proof‐of‐concept study outlines an expeditious solution to obtaining natural‐product‐inspired chemical matter with desirable properties.
Keywords:chemical biology  computer-assisted drug design  drug discovery  organic synthesis  polypharmacology
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