Enhanced free-energy calculation using multiscale simulation

We propose a multiscale simulation method combining the efficiency of a coarse-grained model (CGM) and the accuracy of an all-atom model (AAM) for free-energy landscape calculation of protein systems. A protein's conformation space is quickly searched first using CGM. Then the obtained information is incorporated into AAM simulations. The free-energy landscape is subsequently obtained from AAM simulations. This method was tested on chignolin folding. The results demonstrated that the computational time was reduced by as much as 90%.