Thermochemistry of the Reaction of Solvated Sodium Ion Clusters with Thymine in the Gas Phase: An Example of the Reaction in Microcosmic Environment

The thermochemistry of the reaction of the microsolvated Na⁺ such as Na(H₂O) _n ; n?=?1?6]⁺, Na(NH₃) _n ; n?=?1?6]⁺ and Na(H₂O) _n (NH₃) _m ; n?+?m?=?2?6]⁺ with thymine (Thy), as an example of a reaction in the microcosmic environment, have been studied in this work, theoretically. It was found that the increase of the number of solvent molecules in the structure of microsolvated Na⁺ is accompanied by the decrease of the standard enthalpy (\(\Delta H_{r}^{^\circ }\)) and Gibbs free (\(\Delta G_{r}^{^\circ }\)) energies of the reaction (Thy?+?Na(X) _n ]⁺→Thy-Na(X) _n ⁺ ; X?=?solvent molecule). Also, the calculations showed that the electronic intermolecular interaction (?E_int) between the Thy and microslovated Na⁺ decreased with the increase of solvent molecules. For the interaction of the Na(H₂O) _n ; n?=?4, 5 and 6]⁺ ions with the Thy, there was the probability of forming of the hydrogen bond between water molecules in the structure of solvated Na⁺ and the Thy. The gas phase infrared (IR) spectra of the complexes of the microsolvated Na⁺ with the Thy for different values of n were calculated and compared with each other to follow the change in the frequency of the stretching vibration of the interaction path between the C=O group of the Thy and Na (O…Na) with n. Using the calculated values of \(\Delta G_{r}^{^\circ }\) of the reactions, the mole fractions of the complexes of microsolvated Na⁺ ions with the Thy were calculated at different humidity.