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Balanced vertices in trees and a simpler algorithm to compute the genomic distance
Authors:Péter L Erdős  Lajos Soukup  Jens Stoye
Institution:1. Alfréd Rényi Institute of Mathematics, Budapest, P.O. Box 127, H-1364, Hungary;2. Universität Bielefeld, Technische Fakultät, AG Genominformatik, 33594 Bielefeld, Germany
Abstract:This paper provides a short and transparent solution for the covering cost of white–grey trees which play a crucial role in the algorithm of Bergeron et al. to compute the rearrangement distance between two multichromosomal genomes in linear time (A. Bergeron, J. Mixtacki, J. Stoye, A new linear time algorithm to compute the genomic distance via the double cut and join distance, Theor. Comput. Sci. 410 (2009) 5300–5316). In the process it introduces a new center notion for trees, which seems to be interesting on its own.
Keywords:
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