Langevin dynamics simulations of macromolecules on parallel computers |
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Authors: | Bernd Jung,Hans-Peter Lenhof,Peter Mü ller,Christine Rü b |
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Abstract: | A parallel algorithm is developed that allows efficient Langevin-dynamics simulations of macromolecular coils, which is the usual structure of synthetic polymers in solution and in bulk. Contrary to usual so-called spatial decomposition algorithms, we map the one-dimensional topology of the chain molecule on the parallel computer. The speedup of the algorithm is measured on different multi-processor systems. The reliability of the parallel calculations is shown by comparison with sequential simulations. |
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